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Nature of Genome:
General Host Type:
Morphology:

positive-stranded ssRNA
Plants
not enveloped, isometric


Family

00.067.   Unassigned


 

Taxonomic Structure of the Family

 

Family         00.067. Unassigned
Genus                      00.067.0.01. Sobemovirus


Genus

00.067.0.01.   Sobemovirus

Type Species

00.067.0.01.001.     Southern bean mosaic virus

List of Species Demarcation Criteria in the Genus

The criteria demarcating species in the genus are:
  • Different host ranges in certain plant species.
  • Antigenic differences, and
  • Values of 40% or more sequence difference as assessed by hybridization tests or by comparisons of sequence data.
  • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.067.0.01.002.

    Blueberry shoestring virus

    (HPV-4)

    00.067.0.01.002.00.001.

        Blueberry shoestring virus

    [NC_003138]

    (BSSV)

    00.067.0.01.003.

    Cocksfoot mottle virus

    (HPV-4)

    00.067.0.01.003.00.001.

        Coeksfoot mottle virus

    [Z48630]

    (COMV)

    00.067.0.01.003.00.001.

        Coeksfoot mottle virus

    [NC_002618]

    (COMV)

    00.067.0.01.003.00.001.

        Coeksfoot mottle virus

    [L40905]

    (COMV)

    00.067.0.01.004.

    Lucerne transient streak virus

    (HPV-4)

    00.067.0.01.004.00.001.

        Lucerne transient streak virus

    [NC_001696]

    (LTSV)

    00.067.0.01.005.

    Rice yellow mottle virus

    (HPV-4)

    00.067.0.01.005.00.001.

        Rice yellow mottle virus - Cote d'Ivoire

    [NC_001575]

    (RYMV-Cl)

    00.067.0.01.005.00.002.

        Rice yellow mottle virus - Nigeria

    [U23142]

    (RYMV-Ni)

    00.067.0.01.018.

    Ryegrass mottle virus

    (HPV-4)

    00.067.0.01.018.00.001.

        Ryegrass mottle virus

    [NC_003747]

    (RGMoV)

    00.067.0.01.020.

    Sesbania mosaic virus

    (HPV-4)

    00.067.0.01.020.00.001.

        Sesbania mosaic virus

    [NC_802568]

    (SeMV)

    00.067.0.01.006.

    Solanum nodiflorum mottle virus

    (HPV-4)

    00.067.0.01.006.00.001.

        Solanum nodiflorum mottle virus

    (SNMoV)

    00.067.0.01.007.

    Southern bean mosaic virus

    (HPV-4)

    00.067.0.01.007.00.001.

        Southern bean mosaic virus

    [L34672]

    (SBMV)

    00.067.0.01.007.00.002.

        Southern bean mosaic virus -B/Ark

    [NC_004060]

    (SBMV-BAr)

    00.067.0.01.017.

    Southern cowpea mosaic virus

    (HPV-4)

    00.067.0.01.017.00.001.

        Southern cowpea mosaic virus

    [NC_001625]

    (SCPMV)

    00.067.0.01.008.

    Sowbane mosaic virus

    (HPV-4)

    00.067.0.01.008.00.001.

        Sowbane mosaic virus

    (SOMV)

    00.067.0.01.009.

    Subterranean clover mottle virus

    (HPV-4)

    00.067.0.01.009.00.001.

        Subterranean clover mottle virus

    (SCMoV)

    00.067.0.01.010.

    Turnip rosette virus

    (HPV-4)

    00.067.0.01.010.00.001.

        Turnip rosette virus

    [NC_004553]

    (TRoV)

    00.067.0.01.011.

    Velvet tobacco mottle virus

    (HPV-4)

    00.067.0.01.011.00.001.

        Velvet tobacco mottle virus

    (VTMoV)







































    Tentative Species in the Genus

    00.067.0.81.012.

    Cocksfoot mild mottle virus

    (HPV-4)

    00.067.0.81.012.00.001.

        Cocksfoot mild mosaic virus

    (CMMV)

    00.067.0.81.013.

    Cynosurus mottle virus

    (HPV-4)

    00.067.0.81.013.00.001.

        Cynosurus mottle virus

    (CnMoV)

    00.067.0.81.014.

    Ginger chlorotic fleckvirus

    (HPV-4)

    00.067.0.81.014.00.001.

        Ginger chlorotic fleck virus

    (GCFV)

    00.067.0.81.021.

    Rottboelia yellow mottle virus

    (HPV-4)

    00.067.0.81.021.00.001.

        Rottboellia mottle virus

    (RoMoV)











    Similarity with other Taxa

    The 5'-terminal half of the sobemovirus genome resembles that of the poleroviruses and enamoviruses with the successive functional domains of a serine protease-like, a VPg and an RdRp. Moreover, polymerase sequences of the sobemoviruses are phylogenetically related to those of the poleroviruses and enamoviruses. By contrast, the CP of the sobemoviruses - encoded by the 3'terminal half of the genome - shows sequences and structural similarities with the CP of members of the genus Necrovirus of the family Tombusviridae. A member of the species Mushroom bacilliform virus, the unique species of the family Barnaviridae, has a genomic organization similar to that of the sobemoviruses and showed sequence identities with them, both in the polymerase and in the CP genes. Genomic organization of animal viruses of the family Astroviridae also shows similarities to that of sobemoviruses, but the sequence identities are more remote.

    Derivation of Names

    Sobemo: sigla derived from the name of type species Southern bean mosaic.

    References

    Collated from VIIIth ICTV Report

    Contributed by

    Hull, R. and Fargette, D.


    Cite this publication as: Index of Viruses - Sobemovirus (2006). In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C (Ed), Columbia University, New York, USA. http://www.ncbi.nlm.nih.gov/ICTVdb/Ictv/fs_index.htm

    Version 4 is based on Virus Taxonomy, Classification and Nomenclature of Viruses, 8th ICTV Report of the International Committee on Taxonomy of Viruses. Fauquet, CM, Mayo, MA, Maniloff, J, Desselberger, U, and Ball, LA (EDS) (2005) Elsevier/Academic Press, pp. 1259.


    Additional References

    Reference List from the 8th ICTV Report
    ICTVdB taxon description
    ICTVdB Picture Gallery

    References to sequence databases at GenBank and PubMed Central:
    PubMed Central References; nucleotide sequences; complete genomes




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