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03.019.0.01.014.00.100.006. SARS-Coronavirus HKU-65806

Cite this publication as: ICTVdB Management (2006). 03.019.0.01.014.00.100.006. SARS-Coronavirus HKU-65806. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Isolate designation: HKU-65806.
Isolation date: Onset of disease was March 24, 2003 ; 12 July; 2003.
Location: Hong Kong; Hong Kong.

Host of Isolate and Habitat Details
Source of isolate: human.
Virus was isolated from throat swab.
Virus was isolated from an adult.

Collection and Isolation Details
Virus was isolated by Dr J.S. Malik Peiris. Department of Microbiology; University of Hong Kong; Pokfulam Rd; Hong Kong, Special Administrative Region; China; email: [mailto] malik@hkucc.hku.hk.

Reference to Isolation Report
Guan Y, Peiris JS, Zheng B, Poon LL, Chan KH, Zeng FY, Chan CW, Chan MN, Chen JD, Chow KY, Hon CC, Hui KH, Li J, Li VY, Wang Y, Leung SW, Yuen KY, Leung FC (2004) Molecular epidemiology of the novel coronavirus that causes severe acute respiratory syndrome, The Lancet, 363, 99-104; PubMed ID 14726162.

Depositories and Collections

The isolate has been deposited at an institution at Hong Kong University Repository, Hong Kong, China.

Classification

This is a description of a vertebrate virus at the isolate level.

ICTVdB Virus Code: 03.019.0.01.014.00.100.006. Virus accession number: I036SARS. Former accession number: 41C88EC8.
NCBI Taxon Identifier NCBI Taxonomy ID: 231520.

Name, Synonyms and Lineage

Synonym(s): HKU-65. Virus is assigned to species SARS coronavirus of the genus 03.019.0.01. Coronavirus; of the family 03.019. Coronaviridae; of the order 03. Nidovirales .

Virion Properties

Morphology

Virions consist of an envelope, spikes, and a nucleocapsid.

Nucleic Acid

The genome is not segmented and contains a single molecule of linear positive-sense, single-stranded RNA. Sequence can be accessed from GenBank. The RNA is partially sequenced, sequenced region is 11010 nucleotides long. Sequence has the accession number [AY304493].

Reference to nucleotide sequence in PubMed: reference(s). GenBank records for nucleotide sequences; complete genome sequences.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Animalia.

Kingdom Animalia
Phylum Chordata.

Phylum Vertebrata
Subphylum Vertebrata; Class Mammalia.

Class Mammalia Order Primates;
Family Hominidae.
Virus infects Homo sapiens (human).

Comments

This isolate is from the Amoy Gardens SARS outbreak in Hong Kong.

References

PubMed References.

Contributor

Data have been submitted online to ICTVdB on 01-12-05 by
Sara Mullins
American Type Culture Collection;
George Mason University;
PW II, 10801 University Boulevard;
Manassas; VA; 20110;
United States of America;
Tel: + 703-365-2700;
Fax: + 703-365-2701;
email: ICTVdB Management. Involved in the isolation of the virus was also F.C. Leung, Ph.D; Department of Zoology, University of Hong Kong, Hong Kong SAR, China; F.Y. Zeng, Ph.D; Department of Zoology, University of Hong Kong, Hong Kong SAR, China; Y. Guan, Ph.D; Department of Microbiology, University of Hong Kong, Hong Kong SAR, China.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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