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03.019.0.01.014.00.100.004. SARS-Coronavirus CUHK-AG02

Cite this publication as: ICTVdB Management (2006). 03.019.0.01.014.00.100.004. SARS-Coronavirus CUHK-AG02. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Isolate designation: CUHK-AG02.
Isolation date: 03 March 2003.
Location: Kwun Tong; Kowloon; Hong Kong.

Host of Isolate and Habitat Details
Source of isolate: human.
Virus was isolated from nasopharyngeal aspirate.
Virus was isolated from an adult.

Collection and Isolation Details
Virus was isolated by Dr Stephen S.C Chim. Department of Chemical Pathology; University of Hong Kong, Prince of Wales Hospital; Hong Kong, Special Administrative Region; China; email: [mailto] loym@cuhk.edu.hk.

Reference to Isolation Report
Chim, S.S.C., Tsui, S.K.W., Chan, K.C.A., et. al. (Nov. 29, 2003) Genomic characterisation of the severe acute respiratory syndrome coronavirus of Amoy Gardens; PubMed ID 14654320.

Classification

This is a description of a vertebrate virus at the isolate level.

ICTVdB Virus Code: 03.019.0.01.014.00.100.004. Virus accession number: I009SARS. Former accession number: 4109815C.
NCBI Taxon Identifier NCBI Taxonomy ID: 239242.

Name, Synonyms and Lineage

Virus is assigned to species SARS coronavirus of the genus 03.019.0.01. Coronavirus; of the family 03.019. Coronaviridae; of the order 03. Nidovirales .

Virion Properties

Particles contain nucleic acid.

Virion Properties

Morphology

Virions consist of an envelope and a nucleocapsid (Spike proteins are most likely present as well, but were never specifically mentioned). Virus capsid is enveloped.

Nucleic Acid

The genome is not segmented and contains a single molecule of linear positive-sense, single-stranded RNA. The complete genome is This sequence is identical to isolate CUHK-AG01, although each isolate was deriv 29736 nucleotides long. Sequence can be accessed from GenBank; the RNA is fully sequenced, complete sequence is 29736 nucleotides long. Sequence has the accession number [AY345987]. The 3'-terminus has a poly (A) tract 24 nucleotides in length.

Reference to nucleotide sequence in PubMed: reference(s). GenBank records for nucleotide sequences; complete genome sequences.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Animalia.

Kingdom Animalia
Phylum Chordata.

Phylum Vertebrata
Subphylum Vertebrata; Class Mammalia.

Class Mammalia Order Primates;
Family Hominidae.
Virus infects Homo sapiens (human).

General Symptoms in Animals Infection can affect the Respiratory symptoms were not described as present or absent gastrointestinal system and musculo-skeletal system. General symptoms include fever and malaise. Signs and symptoms include diarrhea; myalgia.

Severity and Occurrence of Disease

Host: Infection is apparent. The infection is clinically expressed.

References

PubMed References.

Contributor

Data have been submitted online to ICTVdB on 01-12-05 by
Sara Mullins
American Type Culture Collection;
George Mason University;
PW II, 10801 University Boulevard;
Manassas; VA; 20110;
United States of America;
Tel: + 703-365-2700;
Fax: + 703-365-2701;
email: ICTVdB Management. Involved in the isolation of the virus was also Stephen Kwok-Wing Tsui, PhD; Department of Biochemistry, University of Hong Kong, Prince of Wales Hospital, Hong Kong SAR, China; K.C.A. Chan, MRCP; Department of Chemical Pathology, University of Hong Kong, Prince of Wales Hospital, Hong Kong SAR, China; T.C.C. Au, MPhil; Department of Biochemistry, University of Hong Kong, Prince of Wales Hospital, Hong Kong SAR, China.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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