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Descriptions are generated automatically from the ICTVdB database including links. Some descriptions are only very basic and links may point to documents that are not yet published on the Web.

03.019.0.01.014.00.044.004. SARS-Coronavirus BJ01

Cite this publication as: ICTVdB Management (2006). 03.019.0.01.014.00.044.004. SARS-Coronavirus BJ01. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Isolate designation: BJ01.
Isolation date: 03 June 2003. Patient died on the 7th; isolate was derived at autopsy.
Location: Shanxi Province; China.

Host of Isolate and Habitat Details
Source of isolate: human.
Virus was isolated from lung tissue; autopsy (patient is also the source of isolate BJ03).
Virus was isolated from an adult.

Collection and Isolation Details
Virus was isolated by Dr Qingyu Zhu. Institute of Microbiology and Epidemiology; Chinese Academy of Military Medical Sciences; Beijing; 100071; China; email: [mailto] qingyzh@yahoo.com.cn.

Reference to Isolation Report
Qin, E., Zhu, W., Yu, M., et. al. (2003) A Complete Sequence and Comparative Analysis of a SARS-Associated Virus (Isolate BJ01). Chinese Science Bulletin, Vol.

Depositories and Collections

The isolate has been deposited at an institution at Institute of Microbiology and Epidemiology, Chinese Academy of Military Medical Sciences, Beijing 100071, China.

Biocontainment Level

Distribution of this virus falls under quarantine restrictions. It is recommended to handle this virus at the biocontainment level BSL-3.

Classification

This is a description of a vertebrate virus at the isolate level.

ICTVdB Virus Code: 03.019.0.01.014.00.044.004. Virus accession number: I003SARS. Former accession number: 40FD660E.
NCBI Taxon Identifier NCBI Taxonomy ID: 228407.

Name, Synonyms and Lineage

Virus is assigned to species SARS coronavirus of the genus 03.019.0.01. Coronavirus; of the family 03.019. Coronaviridae; of the order 03. Nidovirales .

Virion Properties

Particles contain nucleic acid which is encapsidated.

Virion Properties

Morphology

Virions consist of an envelope, spikes, and a nucleocapsid. Virus capsid is enveloped.

Nucleic Acid

The genome is not segmented and contains a single molecule of linear positive-sense, single-stranded RNA. The complete genome is 29725 nucleotides long. Sequence can be accessed from GenBank; the RNA is fully sequenced, complete sequence is 29725 nucleotides long. Sequence has the accession number [AY278488]. The 5'-end of the genome has a methylated nucleotide cap. The 3'-terminus has a poly (A) tract 15 nucleotides in length.

GenBank records for nucleotide sequences; complete genome sequences.

Proteins

The viral genome encodes structural proteins and non-structural proteins.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Animalia.

Kingdom Animalia
Phylum Chordata.

Phylum Vertebrata
Subphylum Vertebrata; Class Mammalia.

Class Mammalia Order Primates;
Family Hominidae.
Virus infects Homo sapiens (human).

General Symptoms in Animals Infection can affect the The patient was diagnosed with SARS before he died, but no specific symptoms were given. General symptoms include death.

References

PubMed References.

Contributor

Data have been submitted online to ICTVdB on 01-12-05 by
Sara Mullins
American Type Culture Collection;
George Mason University;
PW II, 10801 University Boulevard;
Manassas; VA; 20110;
United States of America;
Tel: + 703-365-2700;
Fax: + 703-365-2701;
email: ICTVdB Management. Involved in the isolation of the virus was also Dr. E'de Qin; Institute of Microbiology and Epidemiology, Chinese Academy of Military Medical Sciences, Beijing 100071, China; Dr. Man Yu; Institute of Microbiology and Epidemiology, Chinese Academy of Military Medical Sciences, Beijing 100071, China; Dr. Baochang Fan; Institute of Microbiology and Epidemiology, Chinese Academy of Military Medical Sciences, Beijing 100071, China.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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