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00.078.0.01.005. Groundnut rosette virus


Cite this publication as: ICTVdB Management (2006). 00.078.0.01.005. Groundnut rosette virus. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/


Table of Contents

Isolate Description

Location: Tanzania.

Host of Isolate and Habitat Details
Source of isolate: Arachis hypogaea.

Natural host and symptoms
Arachis hypogaea, different isolates give:

chlorotic rosette — faint mottling of youngest leaflets, then yellowing, curling and malformation of leaflets, some veinbanding and blotching.

green rosette — mild mottling and flecking, but mostly dark green, severe stunting.

mosaic rosette — green blotching and severe chlorosis, but less severe rosetting than with green rosette. There are three components associated with all three rosette diseases;

1) Groundnut rosette assistor virus (GRAV): a luteovirus which gives no overt symptoms in groundnut.

2) Groundnut rosette virus: a virus with a single-stranded RNA genome, which becomes packaged in the GRAV virions, and thus depends on GRAV for aphid transmission, but produces no overt symptoms in groundnut.

3) Groundnut rosette satellites: satellite RNAs that control the symptoms and cause the different types of rosette (chlorotic, green and mosaic).

Reference to Isolation Report
Zimmerman (1907).

Classification

This is a description of a plant virus at the species level.

ICTVdB Virus Code: 00.078.0.01.005. Virus accession number: 78001005. Obsolete virus code: 78.0.1.0.004; superceded accession number: 78010004.
NCBI Taxon Identifier NCBI Taxonomy ID: 47740.

Name, Synonyms and Lineage

ICTV approved acronym: GRV. Virus is an ICTV approved species of the genus 00.078.0.01. Umbravirus; not assigned to a family.

Virion Properties

Enveloped structures occur in vacuoles of infected cells, but no conventional virus structure have been found. Particles contain nucleic acid. Virus relies for encapisadtion and transmittion on the vector of the helper virus and virus relies on the coat protein (CP) from a helper virus, characteristically from a virus in the family (Luteoviridae).

Virion Properties

Morphology

No true particles are found, but vesicles containing viral matter are recovered that consist of a nucleoprotein complex. During their life cycle, virions have not been observed outside a cellular environment.

Electron microscopic preparation and references: Reference for electron microscopic methods: Reddy et al. (1985).

Physicochemical and Physical Properties

There are 1 sedimenting component(s) found in purified preparations. The infectivity is decreased by treatment with ether; retained when deproteinized with phenol or detergent.

Nucleic Acid

The genome is not segmented and contains a single molecule of linear positive-sense, single-stranded RNA. Minor species of non-genomic nucleic acid are also found in virions. The encapsidated nucleic acid is mainly of genomic origin, but virions may also contain satellite RNA. The complete genome is 4019 nucleotides long. The RNA is fully sequenced, complete sequence is 4019 nucleotides long. Sequence has the accession number [Z29702] Em(40)_vi:GRVSATR1 Gb(84)_vi:GRVSATR1 Groundnut rosette virus Malawi chlorotic (MC3A) satellite RNA. 2/94 901bp.
[Z29703] Em(40)_vi:GRVSATR2 Gb(84)_vi:GRVSATR2 Groundnut rosette virus Malawi chlorotic (MC3B) satellite RNA. 2/94 901bp.
[Z29704] Em(40)_vi:GRVSATR3 Gb(84)_vi:GRVSATR3 Groundnut rosette virus Nigerian green (NG3A) satellite RNA. 2/94 898bp.
[Z29705] Em(40)_vi:GRVSATR4 Gb(84)_vi:GRVSATR4 Groundnut rosette virus Nigerian green (NG3B) satellite RNA. 2/94 899bp.
[Z29706] Em(40)_vi:GRVSATR5 Gb(84)_vi:GRVSATR5 Groundnut rosette virus Nigerian mild (NM3A) satellite RNA. 2/94 896bp.
[Z29707] Em(40)_vi:GRVSATR6 Gb(84)_vi:GRVSATR6 Groundnut rosette virus Nigerian mild (NM3B) satellite RNA. 2/94 896bp.
[Z29708] Em(40)_vi:GRVSATR7 Gb(84)_vi:GRVSATR7 Groundnut rosette virus Nigerian mild (NM3C) satellite RNA. 2/94 895bp.
[Z29709] Em(40)_vi:GRVSATR8 Gb(84)_vi:GRVSATR8 Groundnut rosette virus Nigerian mild (NM3D) satellite RNA. 2/94 895bp.
[Z29710] Em(40)_vi:GRVSATR9 Gb(84)_vi:GRVSATR9 Groundnut rosette virus Yellow blotch (YB3A) satellite RNA. 2/94 901bp.
[Z29711] Em(40)_vi:GRVSATR0 Gb(84)_vi:GRVSATR0 Groundnut rosette virus Yellow blotch (YB3B) satellite RNA. 2/94 902bp. 10 sequences. Reference to nucleotide sequence Reddy et al. (1985, Murant et al. (1988).

GenBank records for nucleotide sequences; complete genome sequences.

Proteins

The viral genome encodes prehaps structural proteins and non-structural proteins, or structural proteins.

Lipids

Lipids are present and located in the vesicles encapsidating the viral nucleic acid.

Genome Organization and Replication

By itself, genomic nucleic acid is infectious.

Transcription: Sub-genomic RNA is present in infected cells.

Translation: The genome replicates in the cytoplasm.

Virions are associated with helper virus and dependent on co-infection of helper virus during replication; it requires groundnut rosette assistor virus for aphid transmission, and the satellite RNA determines the symptoms. Virion acts as helper for a satellite virus; a helper for groundnut satellite RNA, which has regions of homology with the host DNA, and is 2.7kb.

Diagnostics and Reference Collections

The best tests for diagnosis are diagnostic hosts; gel electrophoresis of double-stranded RNA.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Plantae.

Kingdom Plantae
Phylum Magnoliophyta (Angiosperms, Class Magnoliopsida (Dicotyledonae).

Class Magnoliopsida (Dicotyledonae)
Subclass ROSIDAE; Order Fabales;
Family Fabaceae (~Leguminosae-Papilionoideae) Arachis hypogaea.

General Symptoms in Plants Virus affects the photosynthetic system. Symptoms are expressed in the leaf include stunting; include rosetting; include deformation of leaves. Symptoms in leaves include development of patterns or markings that are visible in the intercostal regions. Intercostal regions show malformation.

Severity and Occurrence of Disease

Host: Signs and symptoms persist.

Transmission and Vector Relationships

Virus is transmitted by a vector. Virus is transmitted by mechanical inoculation; transmitted by grafting; not transmitted by contact between hosts; not transmitted by seeds.

Vector Transmission:
Virus is transmitted by arthropods, by insects of the order Hemiptera, family Aphididae. Virus is transmitted in a persistent manner; retained when the vector moults; does not replicate in the vector; not transmitted congenitally to the progeny of the vector; requires, for vector transmission, a helper virus (groundnut rosette assistor virus).

Experimental Hosts and Symptoms

Under experimental conditions susceptibility to infection by virus is found in several families. Susceptible host species are found in the Family Chenopodiaceae, Leguminosae-Papilionoideae, Solanaceae. The following species were susceptible to experimental virus infection: Arachis hypogaea, Chenopodium amaranticolor, Chenopodium murale, Chenopodium quinoa, Glycine max, Nicotiana benthamiana, Nicotiana clevelandii, Nicotiana rustica, Nicotiana x edwardsonii, Trifolium incarnatum, Trifolium repens.

Experimentally infected insusceptible Hosts: Families containing insusceptible hosts: Amaranthaceae, Apocynaceae, or Chenopodiaceae, Compositae, Cruciferae, Cucurbitaceae, or Leguminosae-Papilionoideae, Malvaceae, Solanaceae, Umbelliferae. Species inoculated with virus that do not show signs of susceptibility: Abelmoschus esculentus, Anthriscus cerefolium, Beta vulgaris, Brassica campestris, Calendula officinalis, Catharanthus roseus, Coriandrum sativum, Cucurbita pepo, Cyamopsis tetragonoloba, Datura stramonium, Daucus carota, Gomphrena globosa, Hyoscyamus niger, Lathyrus odoratus, Medicago sativa, Nicotiana glutinosa, Nicotiana tabacum, Pastinaca sativa, Petunia x hybrida, Phaseolus vulgaris, Physalis floridana, Pisum sativum, Vigna subterranea, Vigna unguiculata, Vigna unguiculata ssp. cylindrica, Zinnia elegans.

Diagnostic Hosts

Diagnostic host species and symptoms:

Chenopodium amaranticolor — chlorotic local lesions, not systemic.

Nicotiana clevelandii — necrotic rings, then systemic curling and malformation.

Arachis hypogaea — see 'Natural host and symptoms‘.

Diagnostic host: insusceptible host species Cucurbita pepo cv. Eyes, Pisum sativum, Phaseolus vulgaris cvs Black turtle soup, Bountiful, Great Northern and Pinto, Vigna unguiculata.

Maintenance and Propagation Hosts

Most commonly used maintenance and propagation host species are Arachis hypogaea, Nicotiana clevelandii.

Assay Hosts

Host: Assay hosts (for Local lesions or Whole plants):
Chenopodium amaranticolor (L), C. murale (L), C. quinoa (L).

References to host data: Okusanya and Watson (1966, Dubern (1980, Reddy et al. (1985).

Geographical Distribution

The virus spreads in Africa (in all countries south of the Sahara).

Ecology, Epidemiology and Control

Studies reported by Storey and Bottomley (1928, Storey and Ryland (1955, Davies (1975, Adams (1967, Gibbons (1977, Reddy (1984).

List of Strains and Isolates in the Species

Different diseases called groundnut chlorotic rosette, groundnut green rosette and groundnut mosaic rosette caused by complexes of different strains of the virus, its assistor luteovirus and satellite RNAs.

References

Adams, AN. (1967). J. agric. Res. 5: 1.

Davies, JC (1975). Trop. Agric. 52: 359.

Dubern, J. (1980). Phytopath. Z. 99: 318.

Gibbons, R.W. (1977). In: Diseases Pests and Weeds in Tropical Crops, Groundnut rosette virus, p. 19; ed. P. Dorey. Verlag.

Murant, AF et al. (1988). J. gen. Virol. 69: 1479.

Okusanya, B.A.M. and Watson, MA (1966). Ann. appl. Biol. 58: 377.

Reddy, D.V.R. (1984). In: Compendium of Peanut Diseases. Amer. Phytopath. Soc. Groundnut rosette virus, p. 51.

Reddy, D.V.R., Murant, AF and Duncan, GH (1985). Ann. appl. Biol. 107: 57.

Reddy, D.V.R., Raschke, J.H. and Mayo, MA (1985). Ann. appl. Biol. 107: 65.

Storey, HH and Bottomley, AM. (1928). Ann. appl. Biol. 15: 26.

Storey, HH and Ryland, AK. (1955). Ann. appl. Biol. 43: 423.

Zimmerman, A (1907). Pflanzer 3: 129.

The following generic references are cited in the most recent ICTV Report.

PubMed References.

VIDEdB, the plant virus database developed at the Australian National University by Adrian J. Gibbs and collaborators, contains an earlier description with the number 379 by D.V.R. Reddy, 1989. A description of the virus is found in DPV, a database for plant viruses developed by the Association of Applied Biologists (AAB), with the number 355.




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descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription
Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric
Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

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Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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