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00.015.0.05.001. Commelina yellow mottle virus

Cite this publication as: ICTVdB Management (2006). 00.015.0.05.001. Commelina yellow mottle virus. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Location: Guadeloupe.

Host of Isolate and Habitat Details
Source of isolate: Commelina diffusa.

Natural host and symptoms
Commelina diffusa — found only as mixed infections.

Reference to Isolation Report
Migliori and Lastra (1978).

Classification

This is a description of a plant virus at the species level.

ICTVdB Virus Code: 00.015.0.05.001. Virus accession number: 15005001. Obsolete virus code: 15.0.5.0.001; 07.0.1.0.001; superceded accession number: 15050001; 07010001.
NCBI Taxon Identifier NCBI Taxonomy ID: 10653.

Name, Synonyms and Lineage

ICTV approved acronym: CoYMV. Virus is the type of the genus 00.015.0.05. Badnavirus in the family 00.015. Caulimoviridae.

Virion Properties

Morphology

Virions consist of a capsid. Virus capsid is not enveloped. Capsid is elongated and exhibits icosahedral symmetry. The capsid is bacilliform. The capsid shells of virions are composed of multiple layers. With a length of 133 nm and a width of 24 nm.

Electron microscopic preparation and references: Virus preparation contains few virions.

Nucleic Acid

The genome is not segmented and contains a single molecule of circular. The genome is -RT. The genome is double-stranded DNA. The complete genome is 7489 nucleotides long. Sequence can be accessed from EBI-EMBL is fully sequenced, complete sequence is 7489 nucleotides long. Sequence has the accession number [X52938]. The genome has terminally redundant sequences. The terminally redundant sequences have direct terminal repeats; are reiterated internally in inverted form.

GenBank records for nucleotide sequences; complete genome sequences.

Proteins

The viral genome encodes structural proteins and non-structural proteins.

Non-Structural Proteins: The virus codes for an RNA-dependent DNA polymerase.

Lipids

Lipids are not reported.

Transcription: The virus codes for 3 ORF(s).

Translation: Replication involves a reverse transcription step.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Plantae.

Kingdom Plantae
Phylum Magnoliophyta (Angiosperms, Class Liliopsida (Monocotyledonae).

Class Liliopsida (Monocotyledonae)
Subclass COMMELINIDAE; Order Commelinales.

Transmission and Vector Relationships

Virus is not transmitted by mechanical inoculation; transmitted by grafting.

Experimental Hosts and Symptoms

Susceptible host species are found in the Family Commelinaceae. The following species were susceptible to experimental virus infection: Commelina diffusa.

Histopathology: Virus can be best detected in mesophyll. Virions are found in the cytoplasm.

Geographical Distribution

The virus occurs in Guadeloupe and Sudan (Migliori and Lastra, 1978; B.E.L. Lockhart, unpublished data).

References

Medberry, S.L., Lockhart, B.E.L. and Olszewski, N.E. (1990). Nucl. Acids Res. 18: 5505.

Migliori, A and Lastra, R. (1978). Annls. Phytopath. 10: 467.

The following generic references are cited in the most recent ICTV Report.

PubMed References.

VIDEdB, the plant virus database developed at the Australian National University by Adrian J. Gibbs and collaborators, contains an earlier description with the number 243 by A.A. Brunt, 1988.

Taxonomic Proposals and Changes

A taxonomic proposal has been submitted to the ICTV by the Plant Virus Subcommittee, Study Group for Caulimoviridae at the meeting in Strasburg, April 1997. The proposal has been approved at the meeting of the Executive Committee in Strasburg, 1997, the taxon has been removed from the Species (Badnavirus).



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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